Dmitrii E. Makarov: search on Z-Library

The world's largest scientific articles store. 70,000,000+ articles for free.

Don't use scam websites

1

Mathematica 5.1 Wolfram Research Inc., 100 Trade Center Drive, Champaign, IL 61820-7237. www.wolfram. com. Suggested retail price: $1880 (U.S. and Canada) includes one year of premier service. Academic price: $895. Student version: $139.95.

Makarov, Dmitrii E.

Journal:

Journal of the American Chemical Society

Year:

2005

Language:

english

File:

PDF, 12 KB

english, 2005

2

Langevin Dynamics Simulations of the Diffusion of Molecular Knots in Tensioned Polymer Chains †

Huang, Lei, Makarov, Dmitrii E.

Journal:

Journal of Physical Chemistry A

Year:

2007

Language:

english

File:

PDF, 156 KB

english, 2007

3

Translocation of a knotted polypeptide through a pore

Huang, Lei, Makarov, Dmitrii E.

Journal:

The Journal of Chemical Physics

Year:

2008

Language:

english

File:

PDF, 586 KB

english, 2008

4

Tensor propagator for iterative quantum time evolution of reduced density matrices. I. Theory

Makri, Nancy, Makarov, Dmitrii E.

Journal:

The Journal of Chemical Physics

Year:

1995

Language:

english

File:

PDF, 541 KB

english, 1995

5

The topomer search model: A simple, quantitative theory of two-state protein folding kinetics

Dmitrii E. Makarov, Kevin W. Plaxco

Journal:

Protein Science

Year:

2003

Language:

english

File:

PDF, 157 KB

english, 2003

6

Stochastic resonance and nonlinear response in double-quantum-well structures

Makarov, Dmitrii E., Makri, Nancy

Journal:

Physical Review B

Year:

1995

Language:

english

File:

PDF, 162 KB

english, 1995

7

Simulations of the untying of molecular friction knots between individual polymer strands

Kirmizialtin, Serdal, Makarov, Dmitrii E.

Journal:

The Journal of Chemical Physics

Year:

2008

Language:

english

File:

PDF, 144 KB

english, 2008

8

[WORLD SCIENTIFIC Proceedings of the International School of Physics - LERICI, Villa Marigola (7 – 18 July 1997)] Classical and Quantum Dynamics in Condensed Phase Simulations - RAW quantum transition state theory

MILLS, GREG, SCHENTER, GREG K., MAKAROV, DMITRII E., JÓNSSON, HANNES

Language:

english

File:

PDF, 1.37 MB

english

9

Shapes of dominant transition paths from single-molecule force spectroscopy

Makarov, Dmitrii E.

Journal:

The Journal of Chemical Physics

Year:

2015

Language:

english

File:

PDF, 1.04 MB

english, 2015

10

Single-Molecule Test for Markovianity of the Dynamics Along a Reaction Coordinate

Berezhkovskii, Alexander M., Makarov, Dmitrii E.

Journal:

The Journal of Physical Chemistry Letters

Year:

2018

Language:

english

File:

PDF, 733 KB

english, 2018

11

Transient probability currents provide upper and lower bounds on non-equilibrium steady-state currents in the Smoluchowski picture

Copperman, Jeremy, Aristoff, David, Makarov, Dmitrii E., Simpson, Gideon, Zuckerman, Daniel M.

Journal:

The Journal of Chemical Physics

Year:

2019

Language:

english

File:

PDF, 1.32 MB

english, 2019

12

Transient probability currents provide upper and lower bounds on non-equilibrium steady-state currents in the Smoluchowski picture

Copperman, Jeremy, Aristoff, David, Makarov, Dmitrii E., Simpson, Gideon, Zuckerman, Daniel M.

Journal:

The Journal of Chemical Physics

Year:

2019

File:

PDF, 1.32 MB

2019

13

Influence of local and residual structures on the scaling behavior and dimensions of unfolded proteins

Zhisong Wang, Kevin W. Plaxco, Dmitrii E. Makarov

Journal:

Year:

2007

Language:

english

File:

PDF, 181 KB

english, 2007

14

Path integrals for dissipative systems by tensor multiplication. Condensed phase quantum dynamics for arbitrarily long time

Dmitrii E. Makarov, Nancy Makri

Journal:

Chemical Physics Letters

Year:

1994

Language:

english

File:

PDF, 785 KB

english, 1994

15

On the transition from electronically nonadiabatic to solvent-controlled electron transfer

Dmitrii E. Makarov, Maria Topaler

Journal:

Chemical Physics Letters

Year:

1995

Language:

english

File:

PDF, 505 KB

english, 1995

16

Computer simulations of protein translocation

Serdal Kirmizialtin, Lei Huang, Dmitrii E. Makarov

Journal:

physica status solidi (b)

Year:

2006

Language:

english

File:

PDF, 653 KB

english, 2006

17

Computer simulations of protein translocation

Serdal Kirmizialtin, Lei Huang, Dmitrii E. Makarov

Journal:

physica status solidi (b)

Year:

2006

File:

PDF, 488 KB

2006

18

The resistance curve for subcritical cracks near the threshold

Haifeng Zhao, Dmitrii E. Makarov, Gregory J. Rodin

Journal:

International Journal of Fracture

Year:

2011

Language:

english

File:

PDF, 290 KB

english, 2011

19

Molecular nanosprings in spider capture-silk threads

Becker, Nathan, Oroudjev, Emin, Mutz, Stephanie, Cleveland, Jason P., Hansma, Paul K., Hayashi, Cheryl Y., Makarov, Dmitrii E., Hansma, Helen G.

Journal:

Nature Materials

Year:

2003

Language:

english

File:

PDF, 569 KB

english, 2003

20

Tensor propagator for iterative quantum time evolution of reduced density matrices. II. Numerical methodology

Makri, Nancy, Makarov, Dmitrii E.

Journal:

The Journal of Chemical Physics

Year:

1995

Language:

english

File:

PDF, 464 KB

english, 1995

21

Rigorous coarse-graining for the dynamics of linear systems with applications to relaxation dynamics in proteins

Soheilifard, Reza, Makarov, Dmitrii E., Rodin, Gregory J.

Journal:

The Journal of Chemical Physics

Year:

2011

Language:

english

File:

PDF, 778 KB

english, 2011

22

Charge-Site-Dependent Dissociation of Hydrogen-Rich Radical Peptide Cations upon Vacuum UV Photoexcitation

Dr. James A. Madsen, Ryan R. Cheng, Tamer S. Kaoud, Prof. Kevin N. Dalby, Prof. Dmitrii E. Makarov, Prof. Jennifer S. Brodbelt

Journal:

Chemistry - A European Journal

Year:

2012

Language:

english

File:

PDF, 976 KB

english, 2012

23

Site-specific Dimensions Across a Highly Denatured Protein; A Single Molecule Study

Evan R. McCarney, James H. Werner, Summer L. Bernstein, Ingo Ruczinski, Dmitrii E. Makarov, Peter M. Goodwin, Kevin W. Plaxco

Journal:

Journal of Molecular Biology

Year:

2005

Language:

english

File:

PDF, 369 KB

english, 2005

24

Mechanical Unfolding of Segment-Swapped Protein G Dimer: Results from Replica Exchange Molecular Dynamics Simulations

Li, Pai-Chi, Huang, Lei, Makarov, Dmitrii E.

Journal:

Journal of Physical Chemistry B

Year:

2006

Language:

english

File:

PDF, 229 KB

english, 2006

25

Interplay of non-Markov and internal friction effects in the barrier crossing kinetics of biopolymers: Insights from an analytically solvable model

Makarov, Dmitrii E.

Journal:

The Journal of Chemical Physics

Year:

2013

Language:

english

File:

PDF, 551 KB

english, 2013

26

The effect of a mechanical force on quantum reaction rate: Quantum Bell formula

Makarov, Dmitrii E.

Journal:

The Journal of Chemical Physics

Year:

2011

Language:

english

File:

PDF, 461 KB

english, 2011

27

A Theoretical Model for the Mechanical Unfolding of Repeat Proteins

Makarov, Dmitrii E.

Journal:

Biophysical Journal

Year:

2009

Language:

english

File:

PDF, 263 KB

english, 2009

28

The Length and Viscosity Dependence of End-to-End Collision Rates in Single-Stranded DNA

Uzawa, Takanori, Cheng, Ryan R., Cash, Kevin J., Makarov, Dmitrii E., Plaxco, Kevin W.

Journal:

Biophysical Journal

Year:

2009

Language:

english

File:

PDF, 396 KB

english, 2009

29

Denoising Single-Molecule FRET Trajectories with Wavelets and Bayesian Inference

Taylor, J. Nick, Makarov, Dmitrii E., Landes, Christy F.

Journal:

Biophysical Journal

Year:

2010

Language:

english

File:

PDF, 843 KB

english, 2010

30

Universality in the Timescales of Internal Loop Formation in Unfolded Proteins and Single-Stranded Oligonucleotides

Cheng, Ryan R., Uzawa, Takanori, Plaxco, Kevin W., Makarov, Dmitrii E.

Journal:

Biophysical Journal

Year:

2010

Language:

english

File:

PDF, 458 KB

english, 2010

31

Unraveling Individual Molecules by Mechanical Forces: Theory Meets Experiment

Makarov, Dmitrii E.

Journal:

Biophysical Journal

Year:

2007

Language:

english

File:

PDF, 52 KB

english, 2007

32

Fitting potential-energy surfaces: A search in the function space by directed genetic programming

Makarov, Dmitrii E., Metiu, Horia

Journal:

The Journal of Chemical Physics

Year:

1998

Language:

english

File:

PDF, 424 KB

english, 1998

33

Computer Simulations and Theory of Protein Translocation

Makarov, Dmitrii E.

Journal:

Accounts of Chemical Research

Year:

2009

Language:

english

File:

PDF, 1.17 MB

english, 2009

34

On the calculation of absolute free energies from molecular-dynamics or Monte Carlo data

Huang, Lei, Makarov, Dmitrii E.

Journal:

The Journal of Chemical Physics

Year:

2006

Language:

english

File:

PDF, 900 KB

english, 2006

35

A Mechanistic Study of Electron Transfer from the Distal Termini of Electrode-Bound, Single-Stranded DNAs

Uzawa, Takanori, Cheng, Ryan R., White, Ryan J., Makarov, Dmitrii E., Plaxco, Kevin W.

Journal:

Journal of the American Chemical Society

Year:

2010

Language:

english

File:

PDF, 486 KB

english, 2010

36

Computation of transit times using the milestoning method with applications to polymer translocation

Hawk, Alexander T., Konda, Sai Sriharsha M., Makarov, Dmitrii E.

Journal:

The Journal of Chemical Physics

Year:

2013

Language:

english

File:

PDF, 590 KB

english, 2013

37

Molecular Catch Bonds and the Anti-Hammond Effect in Polymer Mechanochemistry

Konda, Sai Sriharsha M., Brantley, Johnathan N., Varghese, Bibin T., Wiggins, Kelly M., Bielawski, Christopher W., Makarov, Dmitrii E.

Journal:

Journal of the American Chemical Society

Year:

2013

Language:

english

File:

PDF, 1.44 MB

english, 2013

38

van der Waals Energies in Density Functional Theory

Kohn, Walter, Meir, Yigal, Makarov, Dmitrii E.

Journal:

Physical Review Letters

Year:

1998

Language:

english

File:

PDF, 174 KB

english, 1998

39

How long does it take to equilibrate the unfolded state of a protein?

Levy, Ronald M., Dai, Wei, Deng, Nan-Jie, Makarov, Dmitrii E.

Journal:

Protein Science

Year:

2013

Language:

english

File:

PDF, 289 KB

english, 2013

40

Simulation of the mechanical unfolding of ubiquitin: Probing different unfolding reaction coordinates by changing the pulling geometry

Li, Pai-Chi, Makarov, Dmitrii E.

Journal:

The Journal of Chemical Physics

Year:

2004

Language:

english

File:

PDF, 490 KB

english, 2004

41

Sequence and Temperature Dependence of the End-to-End Collision Dynamics of Single-Stranded DNA

Uzawa, Takanori, Isoshima, Takashi, Ito, Yoshihiro, Ishimori, Koichiro, Makarov, Dmitrii E., Plaxco, Kevin W.

Journal:

Biophysical Journal

Year:

2013

Language:

english

File:

PDF, 726 KB

english, 2013

42

Insight into the Molecular Origins of the Internal Friction in Unfolded Proteins

Echeverria, Ignacia, Makarov, Dmitrii E., Papoian, Garegin

Journal:

Biophysical Journal

Year:

2013

Language:

english

File:

PDF, 40 KB

english, 2013

43

De-Noising Single Molecule FRET Trajectories using Wavelent and Bayesian Techniques

Landes, Christy F., Taylor, J. Nick, Makarov, Dmitrii E.

Journal:

Biophysical Journal

Year:

2010

Language:

english

File:

PDF, 33 KB

english, 2010

44

Long-Time Quantum Simulation of the Primary Charge Separation in Bacterial Photosynthesis

Nancy Makri, Eunji Sim, Dmitrii E. Makarov and Maria Topaler

Journal:

Proceedings of the National Academy of Sciences

Year:

1996

Language:

english

File:

PDF, 1.11 MB

english, 1996

45

A model for the kinetics of protein folding: Kinetic Monte Carlo simulations and analytical results

Makarov, Dmitrii E., Metiu, Horia

Journal:

The Journal of Chemical Physics

Year:

2002

Language:

english

File:

PDF, 312 KB

english, 2002

46

Exploring the topography of the stress-modified energy landscapes of mechanosensitive molecules

Konda, Sai Sriharsha M., Avdoshenko, Stanislav M., Makarov, Dmitrii E.

Journal:

The Journal of Chemical Physics

Year:

2014

Language:

english

File:

PDF, 959 KB

english, 2014

47

Ubiquitin-like Protein Domains Show High Resistance to Mechanical Unfolding Similar to That of the I27 Domain in Titin: Evidence from Simulations

Li, Pai-Chi, Makarov, Dmitrii E.

Journal:

Journal of Physical Chemistry B

Year:

2004

Language:

english

File:

PDF, 155 KB

english, 2004

48

Nanosecond Dynamics of Single Polypeptide Molecules Revealed by Photoemission Statistics of Fluorescence Resonance Energy Transfer: A Theoretical Study

Wang, Zhisong, Makarov, Dmitrii E.

Journal:

Journal of Physical Chemistry B

Year:

2003

Language:

english

File:

PDF, 97 KB

english, 2003

49

Molecular Weight Effect on the formation of β Phase Poly(9,9′-dioctylfluorene) in Dilute Solutions

Cone, Craig W., Cheng, Ryan R., Makarov, Dmitrii E., Vanden Bout, David A.

Journal:

Journal of Physical Chemistry B

Year:

2011

Language:

english

File:

PDF, 1.28 MB

english, 2011

50

Evidence for Non-Two-State Kinetics in the Nucleocapsid Protein Chaperoned Opening of DNA Hairpins

Cosa, Gonzalo, Zeng, Yining, Liu, Hsiao-Wei, Landes, Christy F., Makarov, Dmitrii E., Musier-Forsyth, Karin, Barbara, Paul F.

Journal:

Journal of Physical Chemistry B

Year:

2006

Language:

english

File:

PDF, 230 KB

english, 2006